Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs12549917 chr8:116877150 A/G 8.4E-7 133 45.1 31.78 18.83 KM Plot
TGCT rs12578725 chr12:129566270 G/T 1.01E-13 134 17.1 46.53 40.57 KM Plot
TGCT rs12586299 chr14:71085215 C/T 1.68E-5 131 40.57 56.83 21.43 KM Plot
TGCT rs12587714 chr14:71004376 G/C 1.3E-5 134 38.2 66.9 21.43 KM Plot
TGCT rs12599370 chr16:27810989 G/A 1.15E-5 132 46.3 33.55 17.27 KM Plot
TGCT rs12599373 chr16:27811044 G/C 1.15E-5 132 46.3 33.55 17.27 KM Plot
TGCT rs12599374 chr16:27811045 G/A 1.15E-5 132 46.3 33.55 17.27 KM Plot
TGCT rs12599387 chr16:27811102 G/A 1.15E-5 132 46.3 33.55 17.27 KM Plot
TGCT rs12625235 chr20:57201798 G/A 2.68E-9 129 37.1 60.68 9.02 KM Plot
TGCT rs12640171 chr4:58374190 A/T 0 131 42.1 53.83 0.5 KM Plot
TGCT rs12643003 chr4:58374247 G/T 0 131 42.1 53.83 0.5 KM Plot
TGCT rs12676086 chr8:116909222 C/A 7.41E-7 134 45.7 28.7 18.83 KM Plot
TGCT rs12775195 chr10:27578679 C/A 2.11E-12 129 42.27 45.83 20.6 KM Plot
TGCT rs12775838 chr10:27573707 G/T 1.64E-12 130 42.18 45.83 20.6 KM Plot
TGCT rs12777898 chr10:27583147 G/A 0 127 42.18 45.83 18.85 KM Plot